RegulonDB RegulonDB 10.6.3: Gene Form
   

rnpB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yhaC garK rnpB Fis Fis Fis Fis rnpBp rnpBp

Gene      
Name: rnpB    Texpresso search in the literature
Synonym(s): ECK3111, EG30069, b3123
Genome position(nucleotides): 3270216 <-- 3270592 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
61.8
External database links:  
ASAP:
ABE-0010269
CGSC:
266
ECHOBASE:
EB4232
ECOCYC:
EG30069
ECOLIHUB:
rnpB
OU-MICROARRAY:
b3123
REGULONDB:
b3123
M3D: rnpB
COLOMBOS: rnpB
PortEco: b3123


Product      
Name: RnpB
Synonym(s): "10S, M1 RNA, M1 ribozyme, RNase P RNA, RNase P catalytic RNA component, RNase P catalytic RNA subunit, RNase P ribozyme, RnasaP", RnpB RNA, catalytic subunit of RNase P, ribonuclease P catalytic RNA component, ribonuclease P ribozyme
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.2 - degradation of macromolecules --> 1.2.1 - RNA
  2 - information transfer --> 2.2 - RNA related --> 2.2.3 - RNA modification
  2 - information transfer --> 2.2 - RNA related --> 2.2.4 - RNA degradation
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:0004526 - ribonuclease P activity
biological_process GO:0008033 - tRNA processing
GO:0001682 - tRNA 5'-leader removal
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Guerrier-Takada C., et al., 1983
External database links:  
ECOCYC:
RNPB-RNA
ECOLIWIKI:
b3123


Operon      
Name: garPLRK-rnpB         
Operon arrangement:
Transcription unit        Promoter
rnpB
garPLRK-rnpB


Transcriptional Regulation      
Display Regulation             
Activated by: FNR, CdaR, Fis
Repressed by: H-NS, Fur, Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Guerrier-Takada C., Gardiner K., Marsh T., Pace N., Altman S., 1983, The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme., Cell 35(3 Pt 2):849-57


RegulonDB