RegulonDB

Gene
Name:	dicF
Synonym(s):	ECK1568, EG31115, b1574
Genome position(nucleotides):	1649382 --> 1649434 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	54.72
External database links:

ASAP:	ABE-0005257
CGSC:	32240
ECHOBASE:	EB4278
OU-MICROARRAY:	b1574
PortEco:	dicF
COLOMBOS:	dicF

Product

Name:

DicF

Synonym(s):

Qin prophage, Qin prophage; small regulatory RNA DicF

Type:

small RNA

Classification:

Multifun Terms (GenProtEC)
		2 - information transfer --> 2.2 - RNA related --> 2.2.7 - antisense RNA
		3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
		5 - cell processes --> 5.1 - cell division
		5 - cell processes --> 5.2 - cell cycle physiology
		8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)
	molecular_function	GO:0005515 - protein binding GO:1903231 - mRNA binding involved in posttranscriptional gene silencing
	biological_process	GO:0051782 - negative regulation of cell division GO:1900191 - negative regulation of single-species biofilm formation GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility

Note(s):

Note(s): ...[more].

Evidence:

[IDA] Inferred from direct assay
[IGI] Inferred from genetic interaction
[IMP] Inferred from mutant phenotype

Reference(s):

External database links:

ECOCYC:

ECOLIWIKI:

Operon

Name:

dicF

Operon arrangement:

Transcription unit	Promoter

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References

Reference(s)
[1] Balasubramanian D., Ragunathan PT., Fei J., Vanderpool CK., 2016, A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli., mSystems 1(1)
[2] Tetart F., Albigot R., Conter A., Mulder E., Bouche JP., 1992, Involvement of FtsZ in coupling of nucleoid separation with septation., Mol Microbiol 6(5):621-7
[3] Windbichler N., von Pelchrzim F., Mayer O., Csaszar E., Schroeder R., 2008, Isolation of small RNA-binding proteins from E. coli: evidence for frequent interaction of RNAs with RNA polymerase., RNA Biol 5(1):30-40
[4] van Helvoort JM., Kool J., Woldringh CL., 1996, Chloramphenicol causes fusion of separated nucleoids in Escherichia coli K-12 cells and filaments., J Bacteriol 178(14):4289-93