RegulonDB RegulonDB 10.7: Gene Form
   

dicF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydfC dicB dicF ydfD terminator anti-terminator anti-anti-terminator dicBp dicBp

Gene      
Name: dicF    Texpresso search in the literature
Synonym(s): ECK1568, EG31115, b1574
Genome position(nucleotides): 1649382 --> 1649434 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.72
External database links:  
ASAP:
ABE-0005257
CGSC:
32240
ECHOBASE:
EB4278
OU-MICROARRAY:
b1574
PORTECO:
dicF
REGULONDB:
b1574
M3D: dicF
COLOMBOS: dicF
PortEco: b1574


Product      
Name: DicF
Synonym(s): Qin prophage, Qin prophage; small regulatory RNA DicF
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.7 - antisense RNA
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
  5 - cell processes --> 5.1 - cell division
  5 - cell processes --> 5.2 - cell cycle physiology
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:1903231 - mRNA binding involved in posttranscriptional gene silencing
biological_process GO:0051782 - negative regulation of cell division
GO:1900191 - negative regulation of single-species biofilm formation
GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
[IGI] Inferred from genetic interaction
[IMP] Inferred from mutant phenotype
Reference(s): [1] Balasubramanian D., et al., 2016
[2] Tetart F., et al., 1992
[3] Windbichler N., et al., 2008
[4] van Helvoort JM., et al., 1996
External database links:  
ECOCYC:
DICF-RNA
ECOLIWIKI:
b1574


Operon      
Name: dicF         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Balasubramanian D., Ragunathan PT., Fei J., Vanderpool CK., 2016, A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli., mSystems 1(1)

 [2] Tetart F., Albigot R., Conter A., Mulder E., Bouche JP., 1992, Involvement of FtsZ in coupling of nucleoid separation with septation., Mol Microbiol 6(5):621-7

 [3] Windbichler N., von Pelchrzim F., Mayer O., Csaszar E., Schroeder R., 2008, Isolation of small RNA-binding proteins from E. coli: evidence for frequent interaction of RNAs with RNA polymerase., RNA Biol 5(1):30-40

 [4] van Helvoort JM., Kool J., Woldringh CL., 1996, Chloramphenicol causes fusion of separated nucleoids in Escherichia coli K-12 cells and filaments., J Bacteriol 178(14):4289-93


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