RegulonDB RegulonDB 10.7: Gene Form
   

sraA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

lon clpX sraA CRP Fis Fis Fis terminator anti-terminator anti-anti-terminator TSS_590 TSS_590 TSS_589 TSS_589 lonp lonp TSS_587 TSS_587 TSS_586 TSS_586 TSS_585 TSS_585 TSS_584 TSS_584 TSS_583 TSS_583 TSS_582 TSS_582 TSS_581 TSS_581

Gene      
Name: sraA    Texpresso search in the literature
Synonym(s): G0-8861, psrA3, t15
Genome position(nucleotides): 458728 <-- 458784 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
40.35
Reference(s): [1] Argaman L., et al., 2001
External database links:  
PORTECO:
sraA
REGULONDB:
sraA
M3D: sraA
COLOMBOS: sraA
PortEco: sraA


Product      
Name: SraA
Synonym(s): "ig:274, PsrA3, T15, psrA3", small RNA SraA, t15
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Argaman L., et al., 2001
[2] Rivas E., et al., 2001
External database links:  
ECOCYC:
SRAA-RNA


Operon      
Name: sraA         
Operon arrangement:
Transcription unit        Promoter
sraA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_581 458066 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_582 458197 forward nd [RS-EPT-CBR] [3]
  promoter TSS_583 458293 forward nd [RS-EPT-CBR] [3]
  promoter TSS_584 458768 forward nd [RS-EPT-CBR] [3]
  promoter TSS_585 458780 forward nd [RS-EPT-CBR] [3]
  promoter TSS_586 458803 forward nd [RS-EPT-CBR] [3]
  promoter TSS_587 458809 forward nd [RS-EPT-CBR] [3]
  promoter TSS_589 458867 forward nd [RS-EPT-CBR] [3]
  promoter TSS_590 458974 forward nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Argaman L., Hershberg R., Vogel J., Bejerano G., Wagner EG., Margalit H., Altuvia S., 2001, Novel small RNA-encoding genes in the intergenic regions of Escherichia coli., Curr Biol 11(12):941-50

 [2] Rivas E., Klein RJ., Jones TA., Eddy SR., 2001, Computational identification of noncoding RNAs in E. coli by comparative genomics., Curr Biol 11(17):1369-73

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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