RegulonDB RegulonDB 10.8: Gene Form
   

sraB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rluC yceF yceD sraB TSS_1384 (cluster) TSS_1384 (cluster) TSS_1383 TSS_1383 TSS_1382 (cluster) TSS_1382 (cluster) TSS_1381 TSS_1381 TSS_1380 TSS_1380 TSS_1379 (cluster) TSS_1379 (cluster) TSS_1378 TSS_1378 TSS_1377 TSS_1377 TSS_1376 (cluster) TSS_1376 (cluster) TSS_1375 (cluster) TSS_1375 (cluster) TSS_1374 TSS_1374 TSS_1373 TSS_1373 TSS_1372 TSS_1372 TSS_1371 TSS_1371 TSS_1370 TSS_1370 yceDp2 yceDp2 yceFp6 yceFp6 yceFp9 yceFp9 TSS_1368 (cluster) TSS_1368 (cluster) yceDp1 yceDp1 yceFp7 yceFp7 TSS_1366 TSS_1366 yceFp8 yceFp8 TSS_1365 TSS_1365 psrDp psrDp

Gene      
Name: sraB    Texpresso search in the literature
Synonym(s): ECK1073, G0-8862, b4418, pke20, psrA4, psrD
Genome position(nucleotides): 1146589 --> 1146757 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
38.46
Reference(s): [1] Argaman L., et al., 2001
External database links:  
ASAP:
ABE-0047242
ECHOBASE:
EB4507
PortEco:
psrD
COLOMBOS: sraB


Product      
Name: SraB
Synonym(s): Pke20, PsrA4, PsrD, pke20, psrA4, psrD, small RNA SraB
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Argaman L., et al., 2001
[2] Tjaden B., et al., 2002
External database links:  
ECOCYC:
SRAB-RNA
ECOLIWIKI:
b4418


Operon      
Name: sraB         
Operon arrangement:
Transcription unit        Promoter
sraB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1365 1146590 forward nd [RS-EPT-CBR] [3]
  promoter yceFp8 1146607 reverse Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter TSS_1366 1146625 reverse nd [RS-EPT-CBR] [3]
  promoter yceFp7 1146628 reverse Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter TSS_1368 (cluster) 1146701 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter yceFp9 1146749 reverse Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter yceFp6 1146761 reverse Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter TSS_1370 1146794 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1371 1146809 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1372 1147056 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1373 1147094 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1374 1147132 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1375 (cluster) 1147141 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_1376 (cluster) 1147146 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_1377 1147188 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1378 1147194 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1379 (cluster) 1147206 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_1380 1147213 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1381 1147215 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1382 (cluster) 1147300 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_1383 1147307 forward nd [RS-EPT-CBR] [3]
  promoter TSS_1384 (cluster) 1147313 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Argaman L., Hershberg R., Vogel J., Bejerano G., Wagner EG., Margalit H., Altuvia S., 2001, Novel small RNA-encoding genes in the intergenic regions of Escherichia coli., Curr Biol 11(12):941-50

 [2] Tjaden B., Saxena RM., Stolyar S., Haynor DR., Kolker E., Rosenow C., 2002, Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays., Nucleic Acids Res 30(17):3732-8

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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