RegulonDB RegulonDB 10.9: Gene Form
   

cyaR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: cyaR    Texpresso search in the literature
Synonym(s): ECK2078, G0-8878, b4438, ryeE
Genome position(nucleotides): 2167114 --> 2167200 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.53
External database links:  
ASAP:
ABE-0047258
ECHOBASE:
EB4522
ECOLIHUB:
cyaR
COLOMBOS: cyaR


Product      
Name: small regulatory RNA CyaR
Synonym(s): CyaR, RyeE
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.7 - antisense RNA
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
Gene Ontology Terms (GO)  
molecular_function GO:0061980 - regulatory RNA binding
GO:0005515 - protein binding
GO:0003729 - mRNA binding
GO:0048027 - mRNA 5'-UTR binding
biological_process GO:0070928 - regulation of mRNA stability, ncRNA-mediated
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] De Lay N., et al., 2009
[2] Johansen J., et al., 2008
[3] Mihailovic MK., et al., 2018
[4] Sylwan L., et al., 2010
External database links:  
ECOCYC:
RYEE-RNA
ECOLIWIKI:
b4438


Operon      
Name: cyaR         
Operon arrangement:
Transcription unit        Promoter
cyaR
cyaR
cyaR


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: CpxR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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