RegulonDB RegulonDB 10.8: Gene Form
   

sibA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yegL sibA sibB ibsA ibsB pphC SibB SibA sibBp sibBp sibAp sibAp

Gene      
Name: sibA    Texpresso search in the literature
Synonym(s): ECK2068, G0-8884, QUAD1a, b4436, ryeC, tp11
Genome position(nucleotides): 2153311 --> 2153454 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.31
External database links:  
ASAP:
ABE-0047256
ECHOBASE:
EB4520
PortEco:
sibA
COLOMBOS: sibA


Product      
Name: SibA
Synonym(s): QUAD1a, RyeC, Tp11, ryeC, small RNA SibA, tp11
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.7 - antisense RNA
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Fozo EM., et al., 2008
[2] Wassarman KM., et al., 2001
External database links:  
ECOCYC:
RYEC-RNA
ECOLIWIKI:
b4436


Operon      
Name: sibA         
Operon arrangement:
Transcription unit        Promoter
sibA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  srna SibA 2153349 2153408 reverse unknow. nd nd
  srna SibB 2153681 2153737 reverse unknow. nd nd


Reference(s)    

 [1] Fozo EM., Kawano M., Fontaine F., Kaya Y., Mendieta KS., Jones KL., Ocampo A., Rudd KE., Storz G., 2008, Repression of small toxic protein synthesis by the Sib and OhsC small RNAs., Mol Microbiol 70(5):1076-93

 [2] Wassarman KM., Repoila F., Rosenow C., Storz G., Gottesman S., 2001, Identification of novel small RNAs using comparative genomics and microarrays., Genes Dev 15(13):1637-51


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