RegulonDB RegulonDB 10.8: Gene Form
   

sibB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

mdtA sibB sibA ibsA ibsB BaeR CpxR CpxR SibB SibA mdtAp mdtAp sibBp sibBp

Gene      
Name: sibB    Texpresso search in the literature
Synonym(s): ECK2069, G0-8885, QUAD1b, b4437, ryeD, tpe60
Genome position(nucleotides): 2153646 --> 2153781 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.41
External database links:  
ASAP:
ABE-0047257
ECHOBASE:
EB4521
PortEco:
sibB
COLOMBOS: sibB


Product      
Name: SibB
Synonym(s): QUAD1b, RyeD, Tpe60, ryeD, small RNA SibB, tpe60
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.7 - antisense RNA
Gene Ontology Terms (GO)  
biological_process GO:0035194 - posttranscriptional gene silencing by RNA
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
[IMP] Inferred from mutant phenotype
Reference(s): [1] Fozo EM., et al., 2008
[2] Wassarman KM., et al., 2001
External database links:  
ECOCYC:
RYED-RNA
ECOLIWIKI:
b4437


Operon      
Name: sibB         
Operon arrangement:
Transcription unit        Promoter
sibB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  srna SibA 2153349 2153408 reverse unknow. nd nd
  srna SibB 2153681 2153737 reverse unknow. nd nd


Reference(s)    

 [1] Fozo EM., Kawano M., Fontaine F., Kaya Y., Mendieta KS., Jones KL., Ocampo A., Rudd KE., Storz G., 2008, Repression of small toxic protein synthesis by the Sib and OhsC small RNAs., Mol Microbiol 70(5):1076-93

 [2] Wassarman KM., Repoila F., Rosenow C., Storz G., Gottesman S., 2001, Identification of novel small RNAs using comparative genomics and microarrays., Genes Dev 15(13):1637-51


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