RegulonDB RegulonDB 10.8: Gene Form
   

ypfM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

acrD yffB ypfM dapEp dapEp TSS_2762 TSS_2762 TSS_2761 TSS_2761 ypfMp2 ypfMp2 TSS_2760 TSS_2760 ypfMp ypfMp TSS_2758 TSS_2758 TSS_2757 (cluster) TSS_2757 (cluster)

Gene      
Name: ypfM    Texpresso search in the literature
Synonym(s): ECK4415, G0-8888, b4606
Genome position(nucleotides): 2590807 <-- 2590866 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
38.33
External database links:  
ASAP:
ABE-0285189
PortEco:
ypfM
STRING:
511145.b4606
COLOMBOS: ypfM


Product      
Name: uncharacterized protein YpfM
Synonym(s): YpfM
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 2.408
Isoelectric point: 6.649
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-762
ECOLIWIKI:
b4606
PRIDE:
A5A621
REFSEQ:
YP_001165325
UNIPROT:
A5A621


Operon      
Name: ypfM         
Operon arrangement:
Transcription unit        Promoter
ypfM


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2757 (cluster) 2590885 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_2758 2590896 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2760 2591050 reverse nd [RS-EPT-CBR] [1]
  promoter ypfMp2 2591070 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_2761 2591293 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2762 2591337 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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