RegulonDB RegulonDB 10.8: Gene Form
   

C0293 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

icd ymfD C0293 TSS_1490 TSS_1490 TSS_1489 TSS_1489 TSS_1488 TSS_1488 TSS_1487 TSS_1487 TSS_1486 (cluster) TSS_1486 (cluster)

Gene      
Name: C0293    Texpresso search in the literature
Synonym(s): G0-8897
Type: Phantom Gene
Genome position(nucleotides): 1196714 --> 1196786 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
58.9
Note(s): C0293 is a candidate small RNA locus of approximately 72 nt in length Tjaden B,2002.
Review: 12654996
External database links:  
PortEco:
C0293
COLOMBOS: C0293


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1486 (cluster) 1195396 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1487 1195466 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1488 1195945 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1489 1196007 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1490 1196016 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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