RegulonDB RegulonDB 10.8: Gene Form
   

ynaL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dbpA ynaL fnrS dbpAp2 dbpAp2 TSS_1769 TSS_1769 TSS_1768 TSS_1768 fnrSp fnrSp

Gene      
Name: ynaL    Texpresso search in the literature
Synonym(s): C0343, ECK4600, G0-8900, b4743
Genome position(nucleotides): 1409308 --> 1409481 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.45
External database links:  
PortEco:
 C0343
COLOMBOS: ynaL


Product      
Name: C0343
Synonym(s): YnaL, protein YnaL
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Tjaden B., et al., 2002
External database links:  
ECOCYC:
 MONOMER0-4420
UNIPROT:
 P0DPO3


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1768 1409131 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1769 1409133 forward nd [RS-EPT-CBR] [2]
  promoter dbpAp2 1409338 forward Similarity to the consensus
Read more > 		[ICWHO] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Tjaden B., Saxena RM., Stolyar S., Haynor DR., Kolker E., Rosenow C., 2002, Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays., Nucleic Acids Res 30(17):3732-8

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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