RegulonDB RegulonDB 10.7: Gene Form
   

gadY gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

gadX gadW gadY GadX GadX GadX GadW GadX GadW PhoP YdeO GadY gadYp gadYp gadWp2 gadWp2 gadWp1 gadWp1

Gene      
Name: gadY    Texpresso search in the literature
Synonym(s): ECK3500, G0-8914, IS183, b4452
Genome position(nucleotides): 3664864 --> 3664968 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.52
Reference(s): [1] Opdyke JA., et al., 2004
External database links:  
ASAP:
ABE-0047272
ECHOBASE:
EB4538
PORTECO:
gadY
REGULONDB:
b4452
M3D: gadY
COLOMBOS: gadY
PortEco: gadY


Product      
Name: GadY
Synonym(s): IS183, small regulatory RNA GadY
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.7 - antisense RNA
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
biological_process GO:0001101 - response to acid chemical
GO:0010468 - regulation of gene expression
GO:0031439 - positive regulation of mRNA cleavage
GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
[IEP] Inferred from expression pattern
Reference(s): [2] Chen S., et al., 2002
[3] Lei GS., et al., 2011
[4] Opdyke JA., et al., 2011
[1] Opdyke JA., et al., 2004
External database links:  
ECOCYC:
IS183-RNA
ECOLIWIKI:
b4452


Operon      
Name: gadY         
Operon arrangement:
Transcription unit        Promoter
gadY


Transcriptional Regulation      
Display Regulation             
Activated by: GadX, RcsB
Repressed by: GadW


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Opdyke JA., Kang JG., Storz G., 2004, GadY, a small-RNA regulator of acid response genes in Escherichia coli., J Bacteriol 186(20):6698-705

 [2] Chen S., Lesnik EA., Hall TA., Sampath R., Griffey RH., Ecker DJ., Blyn LB., 2002, A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome., Biosystems 65(2-3):157-77

 [3] Lei GS., Syu WJ., Liang PH., Chak KF., Hu WS., Hu ST., 2011, Repression of btuB gene transcription in Escherichia coli by the GadX protein., BMC Microbiol 11(1):33

 [4] Opdyke JA., Fozo EM., Hemm MR., Storz G., 2011, RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA., J Mol Biol 406(1):29-43


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