RegulonDB RegulonDB 10.8: Gene Form
   

sroA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

sgrR thiB sroA thiP SgrR Cra Cis-reg; riboswitch terminator sroAp sroAp

Gene      
Name: sroA    Texpresso search in the literature
Synonym(s): ECK4619, G0-9381, b4762, tpe79
Genome position(nucleotides): 75516 <-- 75608 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 59.14
Reference(s): [1] Rodionov DA., et al., 2002
External database links:  
PortEco:
 sroA
COLOMBOS: sroA


Product      
Name: SroA
Synonym(s): THI-box 5', ThiB5', ig:44, small RNA SroA, thiB, tpe79-5'
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [2] Vogel J., et al., 2003
External database links:  
ECOCYC:
 RNA0-404


Operon      
Name: sgrR-sroA-thiBPQ         
Operon arrangement:
Transcription unit        Promoter
sroA
sgrR-sroA-thiBPQ


Transcriptional Regulation      
Display Regulation             
Repressed by: SgrR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Rodionov DA., Vitreschak AG., Mironov AA., Gelfand MS., 2002, Comparative genomics of thiamin biosynthesis in procaryotes. New genes and regulatory mechanisms., J Biol Chem 277(50):48949-59

 [2] Vogel J., Bartels V., Tang TH., Churakov G., Slagter-Jager JG., Huttenhofer A., Wagner EG., 2003, RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria., Nucleic Acids Res 31(22):6435-43

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