RegulonDB RegulonDB 10.7: Gene Form
   

rdlA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ldrA ldrB rdlA terminator terminator ldrAp8 ldrAp8 rdlAp5 rdlAp5

Gene      
Name: rdlA    Texpresso search in the literature
Synonym(s): ECK1205, G0-9603, b4420
Genome position(nucleotides): 1269323 --> 1269389 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.24
External database links:  
ASAP:
ABE-0047243
ECHOBASE:
EB4542
PORTECO:
rdlA
REGULONDB:
b4420
M3D: rdlA
COLOMBOS: rdlA
PortEco: rdlA


Product      
Name: RdlA
Synonym(s): RdlA antisense RNA, putative regulator of LdrA, putative antisense RNA regulator of LdrA
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
Reference(s): [1] Kawano M., et al., 2002
[2] Kawano M., et al., 2005
External database links:  
ECOCYC:
RNA0-161
ECOLIWIKI:
b4420


Operon      
Name: rdlA         
Operon arrangement:
Transcription unit        Promoter
rdlA


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter rdlAp5 1269323 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter ldrAp8 1269477 reverse Similarity to the consensus
Read more >
[ICWHO] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Kawano M., Oshima T., Kasai H., Mori H., 2002, Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli., Mol Microbiol 45(2):333-49

 [2] Kawano M., Reynolds AA., Miranda-Rios J., Storz G., 2005, Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli., Nucleic Acids Res 33(3):1040-50

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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