RegulonDB RegulonDB 10.7: Gene Form
   

rdlC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

chaA ldrC rdlC terminator terminator ldrCp4 ldrCp4 rdlCp3 rdlCp3

Gene      
Name: rdlC    Texpresso search in the literature
Synonym(s): ECK1209, G0-9608, b4424
Genome position(nucleotides): 1270393 --> 1270460 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.53
External database links:  
ASAP:
ABE-0047245
ECHOBASE:
EB4544
PORTECO:
rdlC
REGULONDB:
b4424
M3D: rdlC
COLOMBOS: rdlC
PortEco: rdlC


Product      
Name: RdlC
Synonym(s): small regulatory antisense RNA RdlC
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
Gene Ontology Terms (GO)  
biological_process GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
[IMP] Inferred from mutant phenotype
Reference(s): [1] Bak G., et al., 2015
[2] Kawano M., et al., 2002
[3] Kawano M., et al., 2005
External database links:  
ECOCYC:
RNA0-163
ECOLIWIKI:
b4424


Operon      
Name: rdlC         
Operon arrangement:
Transcription unit        Promoter
rdlC


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter rdlCp3 1270391 forward Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter ldrCp4 1270546 reverse Similarity to the consensus
Read more >
[ICWHO] [4]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Bak G., Lee J., Suk S., Kim D., Young Lee J., Kim KS., Choi BS., Lee Y., 2015, Identification of novel sRNAs involved in biofilm formation, motility, and fimbriae formation in Escherichia coli., Sci Rep 5:15287

 [2] Kawano M., Oshima T., Kasai H., Mori H., 2002, Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli., Mol Microbiol 45(2):333-49

 [3] Kawano M., Reynolds AA., Miranda-Rios J., Storz G., 2005, Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli., Nucleic Acids Res 33(3):1040-50

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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