RegulonDB RegulonDB 10.7: Gene Form
   

torI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dsdC torI ypdJ yfdT pawZ terminator anti-terminator TSS_2662 (cluster) TSS_2662 (cluster)

Gene      
Name: torI    Texpresso search in the literature
Synonym(s): ECK2359, G0-9621, b4501
Genome position(nucleotides): 2476310 --> 2476510 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.78
Reference(s): [1] Ansaldi M., et al., 2004
External database links:  
ASAP:
ABE-0269710
PORTECO:
torI
REGULONDB:
b4501
STRING:
511145.b4501
M3D: torI
COLOMBOS: torI
PortEco: torI


Product      
Name: CPS-53 (KpLE1) prophage; prophage CPS-53 recombination directionality factor and response regulator inhibitor
Synonym(s): TorI
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 7.678
Isoelectric point: 10.058
Motif(s):
 
Type Positions Sequence
28 -> 28 Y
45 -> 45 R

 

Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
molecular_function GO:0003677 - DNA binding
GO:0005515 - protein binding
GO:0043565 - sequence-specific DNA binding
GO:0042802 - identical protein binding
biological_process GO:0006310 - DNA recombination
GO:2000143 - negative regulation of DNA-templated transcription, initiation
GO:0044349 - DNA excision
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Ansaldi M., et al., 2004
External database links:  
ECOCYC:
MONOMER0-1641
ECOLIWIKI:
b4501
INTERPRO:
IPR010260
PDB:
1Z4H
PRIDE:
Q2EES9
PRODB:
PRO_000024088
PROTEINMODELPORTAL:
Q2EES9
REFSEQ:
YP_588463
SMR:
Q2EES9
UNIPROT:
Q2EES9


Operon      
Name: torI         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2662 (cluster) 2476376 forward For this promoter, there
Read more >
[RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Ansaldi M., Theraulaz L., Mejean V., 2004, TorI, a response regulator inhibitor of phage origin in Escherichia coli., Proc Natl Acad Sci U S A 101(25):9423-8

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB