RegulonDB RegulonDB 10.8: Gene Form
   

dinQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

gor dinQ agrA LexA LexA agrAp agrAp dinQp dinQp TSS_4110 TSS_4110

Gene      
Name: dinQ    Texpresso search in the literature
Synonym(s): ECK4422, G0-9981, b4613
Genome position(nucleotides): 3647705 <-- 3647788 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.43
External database links:  
PortEco:
dinQ
STRING:
511145.b4613
COLOMBOS: dinQ


Product      
Name: membrane toxin DinQ
Synonym(s): DinQ, UV inducible membrane toxin DinQ
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 3.021
Isoelectric point: 6.491
Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0006974 - cellular response to DNA damage stimulus
Note(s): Note(s): ...[more].
Evidence: [IGI] Inferred from genetic interaction
Reference(s): [1] Weel-Sneve R., et al., 2013
External database links:  
ECOCYC:
MONOMER0-1941
ECOLIWIKI:
b4613
PRIDE:
A5A624
REFSEQ:
YP_001165328
UNIPROT:
A5A624


Operon      
Name: dinQ         
Operon arrangement:
Transcription unit        Promoter
dinQ


Transcriptional Regulation      
Display Regulation             
Repressed by: LexA


Regulation by small RNA    
  Display Regulation
small RNA agrA, agrB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4110 3646532 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Weel-Sneve R., Kristiansen KI., Odsbu I., Dalhus B., Booth J., Rognes T., Skarstad K., Bjoras M., 2013, Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities., PLoS Genet 9(2):e1003260

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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