RegulonDB RegulonDB 10.8: Gene Form
   

yaeR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ldcC tilS yaeR TSS_392 TSS_392 yaeRp3 yaeRp3

Gene      
Name: yaeR    Texpresso search in the literature
Synonym(s): ECK0186, G6095, b0187
Genome position(nucleotides): 211877 --> 212266 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.51
External database links:  
ASAP:
 ABE-0000635
ECHOBASE:
 EB3015
OU-MICROARRAY:
 b0187
PortEco:
 yaeR
STRING:
 511145.b0187
COLOMBOS: yaeR


Product      
Name: VOC domain-containing protein YaeR
Synonym(s): YaeR, putative lyase
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 14.737
Isoelectric point: 4.914
Motif(s):
 
Type Positions Sequence
7 -> 126 VHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCETIRVDPYTQKRFTFFNDPDGLPLEL
6 -> 129 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCETIRVDPYTQKRFTFFNDPDGLPLELYEQ

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0046872 - metal ion binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-11206N
ECOCYC:
 G6095-MONOMER
ECOLIWIKI:
 b0187
INTERPRO:
 IPR004360
INTERPRO:
 IPR037523
INTERPRO:
 IPR037478
INTERPRO:
 IPR029068
MODBASE:
 P52096
PFAM:
 PF00903
PRIDE:
 P52096
PROSITE:
 PS51819
REFSEQ:
 NP_414729
SMR:
 P52096
UNIPROT:
 P52096


Operon      
Name: yaeR         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yaeRp3 211858 forward Similarity to the consensus
Read more > 		[ICWHO] [1]
  promoter TSS_392 212306 forward nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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