RegulonDB RegulonDB 11.1: Gene Form
   

yagJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yagJ yagK insAB3 insA3 insB3 terminator TSS_472 TSS_472

Gene      
Name: yagJ    Texpresso search in the literature
Synonym(s): ECK0275, G6147, b0276
Genome position(nucleotides): 291500 --> 292231
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.91
External database links:  
ASAP:
 ABE-0000963
ECHOBASE:
 EB3319
ECOLIHUB:
 yagJ
OU-MICROARRAY:
 b0276
STRING:
 316407.85674420
COLOMBOS: yagJ


Product      
Name: CP4-6 prophage; protein YagJ
Synonym(s): YagJ
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 27.859
Isoelectric point: 4.622
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0010165 - response to X-ray
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P77169
DIP:
 DIP-11237N
ECOCYC:
 G6147-MONOMER
ECOLIWIKI:
 b0276
PRIDE:
 P77169
REFSEQ:
 NP_414810
UNIPROT:
 P77169


Operon      
Name: yagJ         
Operon arrangement:
Transcription unit        Promoter
yagJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_472 291181 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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