RegulonDB RegulonDB 10.7: Gene Form
   

yagK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yagJ yagL yagK RcdA terminator yagKp6 yagKp6 TSS_473 TSS_473

Gene      
Name: yagK    Texpresso search in the literature
Synonym(s): ECK0276, G6148, b0277
Genome position(nucleotides): 292322 <-- 292948 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
44.82
External database links:  
ASAP:
ABE-0000965
ECHOBASE:
EB3320
OU-MICROARRAY:
b0277
PORTECO:
yagK
REGULONDB:
b0277
STRING:
511145.b0277
M3D: yagK
COLOMBOS: yagK
PortEco: b0277


Product      
Name: CP4-6 prophage; uncharacterized protein YagK
Synonym(s): YagK
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 24.471
Isoelectric point: 7.761
Motif(s):
 
Type Positions Sequence
18 -> 204 KINKLLCYLTNRYPRLIAVRVDLHYPKIVDNGDNICCFPNLEPGVISRMRESLRAKLEADRTRKVREDKRIYRCPLFIIWAKEYSESGKCHYHICLLFNKDAYYHLGDYDQDDNLRGMITGAWYSALRLERDDHPGLVHFPENCKYVLDTNSTDFQQNYQALLTRLDYLTKVESKVFGEGDRNFGCS

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6148-MONOMER
ECOLIWIKI:
b0277
INTERPRO:
IPR021723
PFAM:
PF11726
PRIDE:
P77657
PROTEINMODELPORTAL:
P77657
REFSEQ:
NP_414811
UNIPROT:
P77657


Operon      
Name: yagK         
Operon arrangement:
Transcription unit        Promoter
 


Transcriptional Regulation      
Display Regulation             
Repressed by: RcdA


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_473 293051 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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