RegulonDB RegulonDB 10.7: Gene Form
   

yagN gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

intF yagM yagN ykgV anti-terminator terminator yagNp4 yagNp4 yagNp5 yagNp5 yagNp3 yagNp3 yagNp8 yagNp8 TSS_474 (cluster) TSS_474 (cluster) yagLp7 yagLp7

Gene      
Name: yagN    Texpresso search in the literature
Synonym(s): ECK0279, G6151, b0280
Genome position(nucleotides): 295139 <-- 295579 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.54
External database links:  
ASAP:
ABE-0000976
ECHOBASE:
EB3323
OU-MICROARRAY:
b0280
PORTECO:
yagN
REGULONDB:
b0280
STRING:
511145.b0280
M3D: yagN
COLOMBOS: yagN
PortEco: b0280


Product      
Name: CP4-6 prophage; protein YagN
Synonym(s): YagN
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 15.815
Isoelectric point: 9.663
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6151-MONOMER
ECOLIWIKI:
b0280
PRIDE:
P71297
PROTEINMODELPORTAL:
P71297
REFSEQ:
NP_414814
UNIPROT:
P71297


Operon      
Name: yagN         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yagLp7 294031 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_474 (cluster) 295620 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [2]
  promoter yagNp8 295656 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yagNp3 295660 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yagNp5 295663 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yagNp4 295671 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB