RegulonDB RegulonDB 10.7: Gene Form
   

ecpD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ecpC ecpD ecpE ecpB ykgJ TSS_477 TSS_477 ykgJp3 ykgJp3 ykgJp2 ykgJp2

Gene      
Name: ecpD    Texpresso search in the literature
Synonym(s): ECK0289, G6161, b0290, matE, yagW
Genome position(nucleotides): 305174 <-- 306817 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.58
External database links:  
ASAP:
ABE-0001002
ECHOBASE:
EB3332
OU-MICROARRAY:
b0290
PORTECO:
yagW
REGULONDB:
b0290
STRING:
511145.b0290
M3D: ecpD
COLOMBOS: ecpD
PortEco: b0290


Product      
Name: fimbrial adhesin EcpD
Synonym(s): EcpD, MatE, YagW
Sequence: Get amino acid sequence Fasta Format
Cellular location: pilus
Molecular weight: 59.997
Isoelectric point: 4.991
Motif(s):
 
Type Positions Sequence
1 -> 23 MRVNLLITMIIFALIWPVTALRA
24 -> 547 AVSKTTWADAPAREFVFVENNSDDNFFVTPGGALDPRLTGANRWTGLKYTGSGTIYQQSLGYIDNGYNTGLYTNWKFDMWLENSPVSSPLTGLRCINWYAGCNMTTSLILPQTTDASGFYGATVTSGGAKWMHGMLSDAFYQYMQQMPVGSSFTMTINACQTSVNYDASSGARCKDQASGNWYVRNVTHTKAANLRLINTHSLAEVFINSDGVPTLGEGNADCRTQTIGSRSGLSCKMVNYTLQTNGLSNTSIHIFPAIANSSLASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSADSIYVFFSSNFFKQMVNLGISDINTKDLFNFRFQNTTSPESGWYEFSTSNTLIIKPRDFSISIISDEYTQTPSREGYVGSGESALDFGYIVTTSGKTAADEVLIKVTGPAQVIGGRSYCVFSSDDGKAKVPFPATLSFITRNGATKTYDAGCDDSWRDMTDALWLTTPWTDISGEVGQMDKTTVKFSIPMDNAISLRTVDDNGWFGEVSASGEIHVQATWRNIN

 

Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure
Gene Ontology Terms (GO)  
cellular_component GO:0009289 - pilus
Note(s): Note(s): ...[more].
Reference(s): [1] Korea CG., et al., 2010
[2] Wurpel DJ., et al., 2013
External database links:  
DIP:
DIP-11249N
ECOCYC:
G6161-MONOMER
ECOLIWIKI:
b0290
MINT:
MINT-1311089
PDB:
3QS3
PRIDE:
P77694
PROTEINMODELPORTAL:
P77694
REFSEQ:
NP_414824
UNIPROT:
P77694


Operon      
Name: ecpBCDE         
Operon arrangement:
Transcription unit        Promoter
 
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ykgJp2 304258 reverse Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter ykgJp3 304262 reverse Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter TSS_477 305813 forward nd [RS-EPT-CBR] [4]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Korea CG., Badouraly R., Prevost MC., Ghigo JM., Beloin C., 2010, Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities., Environ Microbiol 12(7):1957-77

 [2] Wurpel DJ., Beatson SA., Totsika M., Petty NK., Schembri MA., 2013, Chaperone-usher fimbriae of Escherichia coli., PLoS One 8(1):e52835

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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