RegulonDB RegulonDB 10.8: Gene Form
   

ykgA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insEF1 insF1 ykgA rclC insE1 ykgQ

Gene      
Name: ykgA    Texpresso search in the literature
Synonym(s): ECK0300, G6170, b0300
Type: Pseudo Gene
Genome position(nucleotides): 316450 <-- 317136 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.09
External database links:  
ASAP:
ABE-0001032
ECHOBASE:
EB3162
OU-MICROARRAY:
b0300
PortEco:
ykgA
STRING:
316407.85674445
COLOMBOS: ykgA


Product      
Name: putative DNA-binding transcriptional regulator YkgA
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 8.99
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.3 - repressor
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0006351 - transcription, DNA-templated
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
Reference(s): [1] Perez-Rueda E., et al., 2000
[2] Perez-Rueda E., et al., 2004
External database links:  
ECOCYC:
G6170-MONOMER
ECOLIWIKI:
b0300
INTERPRO:
IPR011256
INTERPRO:
IPR020449
INTERPRO:
IPR018060
INTERPRO:
IPR009057
MODBASE:
P77601
PFAM:
PF12833
PRIDE:
P77601
PRINTS:
PR00032
PROSITE:
PS01124
REFSEQ:
NP_414834
SMART:
SM00342
SMR:
P77601
UNIPROT:
P77601


Operon      
Name: ykgA         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47

 [2] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50


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