RegulonDB RegulonDB 10.8: Gene Form
   

ykgH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

betA ykgG ykgH b0309 ykgF TSS_479 TSS_479

Gene      
Name: ykgH    Texpresso search in the literature
Synonym(s): ECK0308, G6180, b0310
Genome position(nucleotides): 324696 <-- 325364 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
36.92
External database links:  
ASAP:
ABE-0001066
ECHOBASE:
EB3355
OU-MICROARRAY:
b0310
PortEco:
ykgH
STRING:
511145.b0310
COLOMBOS: ykgH


Product      
Name: uncharacterized protein YkgH
Synonym(s): YkgH
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 25.589
Isoelectric point: 7.761
Motif(s):
 
Type Positions Sequence
189 -> 209 AICLALGFFLSIVISVMFCLV
22 -> 42 IRVILFIMAICMAMVLLFLYI

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6180-MONOMER
ECOLIWIKI:
b0310
PRIDE:
P77180
REFSEQ:
NP_414844
UNIPROT:
P77180


Operon      
Name: ykgH         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_479 324444 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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