RegulonDB RegulonDB 10.8: Gene Form
   

ybaP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybaP ybaK ybaQ chiX ybaPp6 ybaPp6 ybaPp4 ybaPp4 ybaPp3 ybaPp3 ybaQp ybaQp ybaQp3 ybaQp3 TSS_649 TSS_649 TSS_648 TSS_648 TSS_647 TSS_647 TSS_646 TSS_646 chiXp chiXp

Gene      
Name: ybaP    Texpresso search in the literature
Synonym(s): ECK0476, G6258, b0482
Genome position(nucleotides): 507286 <-- 508080 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.09
External database links:  
ASAP:
ABE-0001673
ECHOBASE:
EB3033
OU-MICROARRAY:
b0482
PortEco:
ybaP
STRING:
511145.b0482
COLOMBOS: ybaP


Product      
Name: TraB family protein YbaP
Synonym(s): YbaP
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 29.902
Isoelectric point: 6.751
Motif(s):
 
Type Positions Sequence
30 -> 264 GNRHFHLIGSIHMGSHDMAPLPTRLLKKLKNADALIVEADVSTSDTPFANLPACEALEERISEEQLQNLQHISQEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEGAENQIAMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQSLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6258-MONOMER
ECOLIWIKI:
b0482
INTERPRO:
IPR002816
PFAM:
PF01963
PRIDE:
P77301
REFSEQ:
NP_415015
SMR:
P77301
UNIPROT:
P77301


Operon      
Name: ybaP         
Operon arrangement:
Transcription unit        Promoter
ybaP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_646 507216 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_647 507236 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_648 507241 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_649 508097 reverse nd [RS-EPT-CBR] [1]
  promoter ybaQp3 508174 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ybaPp3 508262 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ybaPp4 508264 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ybaPp6 508284 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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