RegulonDB RegulonDB 10.8: Gene Form
   

ybaT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybaT glsA cueR cueRp6 cueRp6 TSS_658 (cluster) TSS_658 (cluster) TSS_657 TSS_657 TSS_656 TSS_656 TSS_655 TSS_655

Gene      
Name: ybaT    Texpresso search in the literature
Synonym(s): ECK0480, G6262, b0486
Genome position(nucleotides): 512576 --> 513868 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.29
External database links:  
ASAP:
ABE-0001690
ECHOBASE:
EB3037
OU-MICROARRAY:
b0486
PortEco:
ybaT
STRING:
511145.b0486
COLOMBOS: ybaT


Product      
Name: putative transporter YbaT
Synonym(s): YbaT
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 45.659
Isoelectric point: 9.194
Motif(s):
 
Type Positions Sequence
89 -> 109 VFSLALSLLYLLTLAVSIAMV
193 -> 213 GAFFSCIGITFLAYAGFGMMA
273 -> 293 LGHVGYVIVVIGALLATASAI
39 -> 59 ALLMEASTWVAFAFGGIVAMF
129 -> 149 HLILLYALGIIAVMTLFNSLS

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0009268 - response to pH
GO:0006865 - amino acid transport
GO:0055085 - transmembrane transport
GO:1990169 - stress response to copper ion
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
[2] Permina EA., et al., 2006
External database links:  
DIP:
DIP-11308N
ECOCYC:
B0486-MONOMER
ECOLIWIKI:
b0486
INTERPRO:
IPR002293
MINT:
MINT-1267628
PANTHER:
PTHR11785
PFAM:
PF13520
PRIDE:
P77400
PROSITE:
PS00218
REFSEQ:
NP_415019
SMR:
P77400
UNIPROT:
P77400


Operon      
Name: glsA-ybaT         
Operon arrangement:
Transcription unit        Promoter
glsA-ybaT


Transcriptional Regulation      
Display Regulation             
Activated by: GadX


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_655 513563 forward nd [RS-EPT-CBR] [3]
  promoter TSS_656 513566 forward nd [RS-EPT-CBR] [3]
  promoter TSS_657 513642 forward nd [RS-EPT-CBR] [3]
  promoter TSS_658 (cluster) 513647 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter cueRp6 513974 forward Similarity to the consensus
Read more >
[ICWHO] [4]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Permina EA., Kazakov AE., Kalinina OV., Gelfand MS., 2006, Comparative genomics of regulation of heavy metal resistance in Eubacteria., BMC Microbiol 6:49

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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