RegulonDB

Gene
Name:	borD
Synonym(s):	ECK0549, G6312, b0557, bor, iss, vboR, ybcU
Genome position(nucleotides):	578600 <-- 578893 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	41.5
External database links:

ASAP:	ABE-0001902
ECHOBASE:	EB3401
OU-MICROARRAY:	b0557
PortEco:	borD
STRING:	511145.b0557
COLOMBOS:	borD

Product

Name:

DLP12 prophage; prophage lipoprotein BorD

Synonym(s):

Bor, BorD, Iss, VboR, YbcU, lipoprotein bor homolog from lambdoid prophage DLP12

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

10.447

Isoelectric point:

9.706

Motif(s):

Type	Positions	Sequence
	19 -> 95	QQTFTVQNKQTAVAPKETITHHFFVSGIGQKKTVDAAKICGGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYC
	17 -> 97	CAQQTFTVQNKQTAVAPKETITHHFFVSGIGQKKTVDAAKICGGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSK
	1 -> 16	MKKMLLATALALLITG

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0031225 - anchored component of membrane
	biological_process	GO:0071286 - cellular response to magnesium ion

Note(s):

Note(s): ...[more].

Reference(s):

[1] Tenorio E., et al., 2003

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

PRODOM:

PROSITE:

REFSEQ:

UNIPROT:

Operon

Name:

borD

Operon arrangement:

Transcription unit	Promoter
borD	borDp

Transcriptional Regulation
	Display Regulation
Activated by:	PhoP

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References

Reference(s)
[1] Tenorio E., Saeki T., Fujita K., Kitakawa M., Baba T., Mori H., Isono K., 2003, Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation., FEMS Microbiol Lett 225(1):107-14