RegulonDB RegulonDB 10.8: Gene Form
   

ybfO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybfO ybfC ybfB ybfQ TSS_831 TSS_831

Gene      
Name: ybfO    Texpresso search in the literature
Synonym(s): ECK0691, G6376, b0703
Type: Pseudo Gene
Genome position(nucleotides): 734220 --> 735653 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.6
External database links:  
ASAP:
ABE-0002402
ECHOBASE:
EB3425
OU-MICROARRAY:
b0703
PortEco:
ybfO
STRING:
511145.b3593
COLOMBOS: ybfO


Product      
Name: RHS repeats-containing protein YbfO
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 7.6
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-11386N
ECOCYC:
G6376-MONOMER
ECOLIWIKI:
b0703
INTERPRO:
IPR001826
INTERPRO:
IPR031325
INTERPRO:
IPR022385
PFAM:
PF03527
PFAM:
PF05593
PRIDE:
P77779
PRINTS:
PR00394
REFSEQ:
NP_415231
SMR:
P77779
UNIPROT:
P77779


Operon      
Name: ybfOC         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_831 734988 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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