RegulonDB RegulonDB 10.8: Gene Form
   

pxpB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

pxpC ybgI pxpA pxpB TSS_836 TSS_836 TSS_835 (cluster) TSS_835 (cluster)

Gene      
Name: pxpB    Texpresso search in the literature
Synonym(s): ECK0700, G6380, b0711, ybgJ
Genome position(nucleotides): 743593 --> 744249 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 57.84
External database links:  
ASAP:
 ABE-0002426
ECHOBASE:
 EB3090
OU-MICROARRAY:
 b0711
PortEco:
 ybgJ
STRING:
 511145.b0711
COLOMBOS: pxpB


Product      
Name: 5-oxoprolinase component B
Synonym(s): PxpB, YbgJ, putative hydrolase subunit YbgJ
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 23.947
Isoelectric point: 4.914
Motif(s):
 
Type Positions Sequence
6 -> 202 CYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILL

 
Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.6 - protection --> 5.6.2 - detoxification
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity
GO:0016787 - hydrolase activity
GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-48145N
ECOCYC:
 G6380-MONOMER
ECOLIWIKI:
 b0711
INTERPRO:
 IPR029000
INTERPRO:
 IPR010016
INTERPRO:
 IPR003833
MINT:
 MINT-1316053
PANTHER:
 PTHR34698
PDB:
 5DUD
PFAM:
 PF02682
PRIDE:
 P0AAV4
REFSEQ:
 NP_415239
SMART:
 SM00796
SMR:
 P0AAV4
UNIPROT:
 P0AAV4


Operon      
Name: ybgI-pxpBCA-nei         
Operon arrangement:
Transcription unit        Promoter
ybgIJKL-nei
ybgIJKL-nei
nei


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_835 (cluster) 743357 forward For this promoter, there
Read more > 		[RS-EPT-CBR] [1]
  promoter TSS_836 743410 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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