RegulonDB RegulonDB 10.8: Gene Form
   

b0725 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

sucA sucB sdhB b0725 TSS_853 (cluster) TSS_853 (cluster) TSS_852 TSS_852 TSS_851 TSS_851 TSS_850 TSS_850 TSS_849 TSS_849 TSS_848 (cluster) TSS_848 (cluster) TSS_847 TSS_847 sucAp sucAp TSS_846 TSS_846 TSS_845 TSS_845 TSS_844 (cluster) TSS_844 (cluster) TSS_843 (cluster) TSS_843 (cluster)

Gene      
Name: b0725    Texpresso search in the literature
Synonym(s): G6388
Type: Phantom Gene
Genome position(nucleotides): 758464 --> 758724 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.04
External database links:  
OU-MICROARRAY:
b0725
PortEco:
b0725
COLOMBOS: b0725


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_843 (cluster) 758036 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_844 (cluster) 758044 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_845 758063 forward nd [RS-EPT-CBR] [1]
  promoter TSS_846 758585 forward nd [RS-EPT-CBR] [1]
  promoter TSS_847 761388 forward nd [RS-EPT-CBR] [1]
  promoter TSS_848 (cluster) 761444 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_849 761455 forward nd [RS-EPT-CBR] [1]
  promoter TSS_850 761476 forward nd [RS-EPT-CBR] [1]
  promoter TSS_851 761724 forward nd [RS-EPT-CBR] [1]
  promoter TSS_852 761850 forward nd [RS-EPT-CBR] [1]
  promoter TSS_853 (cluster) 762415 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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