RegulonDB RegulonDB 10.7: Gene Form
   

valZ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

lysW valZ lysY Cis-reg Cis-reg TSS_898 TSS_898

Gene      
Name: valZ    Texpresso search in the literature
Synonym(s): ECK0735, G6389, b0746, valTb, valTbeta
Genome position(nucleotides): 781068 --> 781143 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
61.84
External database links:  
ASAP:
ABE-0002531
ECHOBASE:
EB4288
OU-MICROARRAY:
b0746
PORTECO:
valZ
REGULONDB:
b0746
M3D: valZ
COLOMBOS: valZ
PortEco: b0746


Product      
Name: tRNA-Val(UAC)
Synonym(s): tRNAvalZ
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
RNA0-300
ECOLIWIKI:
b0746


Operon      
Name: valZ-lysY         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_898 780920 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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