RegulonDB RegulonDB 10.7: Gene Form
   

lysQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

nadA lysQ lysZ NadR Cis-reg Cis-reg TSS_907 TSS_907 TSS_906 (cluster) TSS_906 (cluster) TSS_905 TSS_905 TSS_904 (cluster) TSS_904 (cluster) TSS_903 (cluster) TSS_903 (cluster) TSS_902 TSS_902 nadAp nadAp TSS_901 TSS_901 TSS_900 (cluster) TSS_900 (cluster) TSS_899 (cluster) TSS_899 (cluster)

Gene      
Name: lysQ    Texpresso search in the literature
Synonym(s): ECK0738, G6392, b0749
Genome position(nucleotides): 781577 --> 781652 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.0
External database links:  
ASAP:
ABE-0002537
ECHOBASE:
EB4285
OU-MICROARRAY:
b0749
PORTECO:
lysQ
REGULONDB:
b0749
M3D: lysQ
COLOMBOS: lysQ
PortEco: b0749


Product      
Name: tRNA-Lys(UUU)
Synonym(s): tRNAlysQ
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Murphy FV., et al., 2004
[2] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
RNA0-303
ECOLIWIKI:
b0749


Operon      
Name: lysQ         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_899 (cluster) 782001 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_900 (cluster) 782008 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_901 782056 forward nd [RS-EPT-CBR] [3]
  promoter TSS_902 782098 forward nd [RS-EPT-CBR] [3]
  promoter TSS_903 (cluster) 782352 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_904 (cluster) 782372 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_905 782376 forward nd [RS-EPT-CBR] [3]
  promoter TSS_906 (cluster) 782394 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_907 782424 forward nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Murphy FV., Ramakrishnan V., Malkiewicz A., Agris PF., 2004, The role of modifications in codon discrimination by tRNA(Lys)UUU., Nat Struct Mol Biol 11(12):1186-91

 [2] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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