RegulonDB RegulonDB 10.8: Gene Form
   

ybhP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

clsB ybhN ybhP ybhQ ybhR ybhQp ybhQp ybhNp5 ybhNp5

Gene      
Name: ybhP    Texpresso search in the literature
Synonym(s): ECK0779, G6407, b0790
Genome position(nucleotides): 823736 <-- 824497 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.51
External database links:  
ASAP:
ABE-0002696
ECHOBASE:
EB3436
OU-MICROARRAY:
b0790
PortEco:
ybhP
STRING:
511145.b0790
COLOMBOS: ybhP


Product      
Name: endonuclease/exonuclease/phosphatase domain-containing protein YbhP
Synonym(s): YbhP
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 28.79
Isoelectric point: 7.117
Motif(s):
 
Type Positions Sequence
33 -> 244 LRDAVRTVSADIVCLQEVMGAHEVHPLHVENWPDTSHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRYPIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLGLREAHRQAQLAMLAEWVNELPDGEPVLVAGDFNDWRQKANHPLKVQAGLDEIFTRAHGRPARTFPVQFPLLRLDRIYVKNASASAPTALPLRTWRHLSDH

 

Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.1 - DNA related --> 2.1.5 - DNA degradation
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-48150N
ECOCYC:
G6407-MONOMER
ECOLIWIKI:
b0790
INTERPRO:
IPR036691
INTERPRO:
IPR005135
MODBASE:
P0AAW1
PFAM:
PF03372
PRIDE:
P0AAW1
REFSEQ:
NP_415311
UNIPROT:
P0AAW1


Operon      
Name: ybhP-clsB-ybhN         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ybhNp5 822648 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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