RegulonDB RegulonDB 10.6.3: Gene Form
   

ybhS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybhF ybhS ybhR ybhG ybhQ TSS_955 TSS_955 TSS_954 TSS_954 TSS_953 TSS_953

Gene      
Name: ybhS    Texpresso search in the literature
Synonym(s): ECK0782, G6410, b0793
Genome position(nucleotides): 826119 <-- 827252 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.11
External database links:  
ASAP:
ABE-0002703
ECHOBASE:
EB3439
ECOCYC:
G6410
ECOLIHUB:
ybhS
OU-MICROARRAY:
b0793
REGULONDB:
b0793
STRING:
511145.b0793
M3D: ybhS
COLOMBOS: ybhS
PortEco: b0793


Product      
Name: putative ABC exporter membrane subunit YbhS
Synonym(s): YbhS
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 42.06
Isoelectric point: 8.434
Motif(s):
 
Type Positions Sequence
292 -> 312 AAQVALNAAFLPSIMLSGFIF
182 -> 202 FIIPGAVTIIMTVIGAILTSL
145 -> 375 IWQIWQMQRAEDNGQTFEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTLGMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRR
235 -> 255 YFLGMLAMLLCMLVSVFILGV
346 -> 366 IPVVLVVNVLFLIASAVMFIG

 

Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
molecular_function GO:0015562 - efflux transmembrane transporter activity
biological_process GO:1990961 - drug transmembrane export
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
YBHS-MONOMER
ECOLIWIKI:
b0793
INTERPRO:
IPR000412
PFAM:
PF12698
PRIDE:
P0AFQ2
PROSITE:
PS51012
PROTEINMODELPORTAL:
P0AFQ2
REFSEQ:
NP_415314
SMR:
P0AFQ2
UNIPROT:
P0AFQ2


Operon      
Name: cecR-ybhGFSR         
Operon arrangement:
Transcription unit        Promoter
null


Transcriptional Regulation      
Display Regulation             
Repressed by: CecR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_953 829107 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_954 829469 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_955 829473 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Mu¿¿iz-Rascado L, Garc¿¿a-Sotelo JS, Weiss V, Solano-Lira H, Mart¿¿nez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hern¿¿ndez S, Alquicira-Hern¿¿ndez K, L¿¿pez-Fuentes A, Porr¿¿n-Sotelo L, Huerta AM, Bonavides-Mart¿¿nez C, Balderas-Mart¿¿nez YI, Pannier L, Olvera M, Labastida A, Jim¿¿nez-Jacinto V, Vega-Alvarado L, Del Moral-Ch¿¿vez V, Hern¿¿ndez-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB