RegulonDB RegulonDB 10.7: Gene Form
   

ybiU gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybiT ybiU ybiV ybiUp6 ybiUp6 ybiUp7 ybiUp7 ybiUp5 ybiUp5

Gene      
Name: ybiU    Texpresso search in the literature
Synonym(s): ECK0811, G6424, b0821
Genome position(nucleotides): 857796 <-- 859061 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.61
External database links:  
ASAP:
ABE-0002804
ECHOBASE:
EB3110
OU-MICROARRAY:
b0821
PORTECO:
ybiU
REGULONDB:
b0821
STRING:
511145.b0821
M3D: ybiU
COLOMBOS: ybiU
PortEco: b0821


Product      
Name: DUF1479 domain-containing protein YbiU
Synonym(s): YbiU
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 47.329
Isoelectric point: 5.741
Motif(s):
 
Type Positions Sequence
16 -> 419 AAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYETNWEGRFTLADLNIHGKRALGM

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-11440N
ECOCYC:
G6424-MONOMER
ECOLIWIKI:
b0821
INTERPRO:
IPR027443
INTERPRO:
IPR010856
MINT:
MINT-1289806
PANTHER:
PTHR30613
PDB:
2DBN
PDB:
2DBI
PFAM:
PF07350
PRIDE:
P75791
PROTEINMODELPORTAL:
P75791
REFSEQ:
NP_415342
SMR:
P75791
SWISSMODEL:
P75791
UNIPROT:
P75791


Operon      
Name: ybiU         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ybiUp5 859100 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter ybiUp7 859104 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter ybiUp6 859106 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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