RegulonDB

Gene
Name:	ybjP
Synonym(s):	ECK0856, G6450, b0865
Genome position(nucleotides):	903952 <-- 904467 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	53.88
External database links:

ASAP:	ABE-0002941
ECHOBASE:	EB3449
OU-MICROARRAY:	b0865
PortEco:	ybjP
STRING:	511145.b0865
COLOMBOS:	ybjP

Product

Name:

DUF3828 domain-containing lipoprotein YbjP

Synonym(s):

YbjP

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

18.991

Isoelectric point:

6.504

Motif(s):

Type	Positions	Sequence
	1 -> 18	MRYSKLTMLIPCALLLSA
	40 -> 154	GPDNVAQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLG
	19 -> 171	CTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

ybjP

Operon arrangement:

Transcription unit	Promoter
ybjP	ybjPp

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_1008	903017	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1009	903019	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1010	903021	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1011	903080	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1012	903084	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1013	903161	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1014	903163	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1015	903465	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1016	903534	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1017	904477	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1019	904520	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1020 (cluster)	904522	forward	For this promoter, there is a cluster of 4 transcription start sites,in the interval 904522 to 904525, where the highest frequency is at position 903746. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_1021 (cluster)	904530	forward	For this promoter, there is a cluster of 3 transcription start sites,in the interval 904530 to 904532, where the highest frequency is at position 903754. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.