RegulonDB RegulonDB 10.8: Gene Form
   

ybjQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybjS amiD ybjP ybjQ TSS_1021 (cluster) TSS_1021 (cluster) ybjPp ybjPp TSS_1020 (cluster) TSS_1020 (cluster) TSS_1019 TSS_1019 ybjQp ybjQp TSS_1017 TSS_1017

Gene      
Name: ybjQ    Texpresso search in the literature
Synonym(s): ECK0857, G6451, b0866
Genome position(nucleotides): 904593 --> 904916 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.01
External database links:  
ASAP:
ABE-0002945
ECHOBASE:
EB3450
OU-MICROARRAY:
b0866
PortEco:
ybjQ
STRING:
511145.b0866
COLOMBOS: ybjQ


Product      
Name: putative heavy metal binding protein YbjQ
Synonym(s): YbjQ
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 11.437
Isoelectric point: 4.609
Motif(s):
 
Type Positions Sequence
1 -> 104 MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVK

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0005515 - protein binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-48266N
ECOCYC:
G6451-MONOMER
ECOLIWIKI:
b0866
INTERPRO:
IPR035439
INTERPRO:
IPR002765
PANTHER:
PTHR34068
PFAM:
PF01906
PRIDE:
P0A8C1
REFSEQ:
NP_415387
SMR:
P0A8C1
SWISSMODEL:
P0A8C1
UNIPROT:
P0A8C1


Operon      
Name: ybjQ-amiD         
Operon arrangement:
Transcription unit        Promoter
ybjQ-amiD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1017 904477 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1019 904520 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1020 (cluster) 904522 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1021 (cluster) 904530 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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