RegulonDB RegulonDB 10.8: Gene Form
   

ybjS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybjT ybjS amiD ybjQ anti-anti-terminator anti-terminator terminator ybjSp3 ybjSp3

Gene      
Name: ybjS    Texpresso search in the literature
Synonym(s): ECK0859, G6453, b0868
Genome position(nucleotides): 905740 <-- 906753 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.44
External database links:  
ASAP:
ABE-0002949
ECHOBASE:
EB3452
MIM:
308050
MIM:
300831
OU-MICROARRAY:
b0868
PortEco:
ybjS
STRING:
511145.b0868
COLOMBOS: ybjS


Product      
Name: putative NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain
Synonym(s): YbjS
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 38.086
Isoelectric point: 8.858
Motif(s):
 
Type Positions Sequence
3 -> 234 VLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPSGRVYNI

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003824 - catalytic activity
GO:0050662 - coenzyme binding
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6453-MONOMER
ECOLIWIKI:
b0868
INTERPRO:
IPR001509
INTERPRO:
IPR036291
MODBASE:
P75821
PFAM:
PF01370
PRIDE:
P75821
REFSEQ:
NP_415389
SMR:
P75821
UNIPROT:
P75821


Operon      
Name: ybjS         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ybjSp3 906898 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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