RegulonDB RegulonDB 10.8: Gene Form
   

ybjX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybjD macA ybjX aqpZ macB macBp2 macBp2 macBp1 macBp1 ybjXp ybjXp aqpZp2 aqpZp2 aqpZp3 aqpZp3

Gene      
Name: ybjX    Texpresso search in the literature
Synonym(s): ECK0868, G6460, b0877
Genome position(nucleotides): 918128 <-- 919120 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.95
External database links:  
ASAP:
ABE-0002982
ECHOBASE:
EB3457
OU-MICROARRAY:
b0877
PortEco:
ybjX
STRING:
511145.b0877
COLOMBOS: ybjX


Product      
Name: DUF535 domain-containing protein YbjX
Synonym(s): YbjX
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 38.358
Isoelectric point: 9.721
Motif(s):
 
Type Positions Sequence
48 -> 325 FWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMA

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0006974 - cellular response to DNA damage stimulus
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-11459N
ECOCYC:
G6460-MONOMER
ECOLIWIKI:
b0877
INTERPRO:
IPR007488
MINT:
MINT-1218149
PANTHER:
PTHR38785
PFAM:
PF04393
PRIDE:
P75829
REFSEQ:
NP_415398
UNIPROT:
P75829


Operon      
Name: ybjX         
Operon arrangement:
Transcription unit        Promoter
ybjX


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter aqpZp3 916133 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter aqpZp2 916212 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter macBp1 920094 forward The sigma factor was determined
Read more >
[AIPP] [2]
  promoter macBp2 920337 forward The sigma factor was determined
Read more >
[AIPP] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [AIPP] Automated inference of promoter position



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Zhao K., Liu M., Burgess RR., 2005, The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo., J Biol Chem 280(18):17758-68


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