RegulonDB RegulonDB 10.8: Gene Form
   

yccT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yccT mgsA yccU CsgD anti-anti-terminator anti-terminator terminator TSS_1292 TSS_1292 TSS_1291 (cluster) TSS_1291 (cluster) yccTp yccTp TSS_1290 TSS_1290 yccTp5 yccTp5 mgsAp mgsAp TSS_1288 TSS_1288

Gene      
Name: yccT    Texpresso search in the literature
Synonym(s): ECK0955, G6498, b0964
Genome position(nucleotides): 1027111 <-- 1027773 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.68
External database links:  
ASAP:
ABE-0003262
ECHOBASE:
EB3486
OU-MICROARRAY:
b0964
PortEco:
yccT
STRING:
511145.b0964
COLOMBOS: yccT


Product      
Name: DUF2057 domain-containing protein YccT
Synonym(s): YccT
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 24.594
Isoelectric point: 5.105
Motif(s):
 
Type Positions Sequence
1 -> 20 MKTGIVTTLIALCLPVSVFA
22 -> 213 TLRLSTDVDLLVLDGKKVSSSLLRGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLENEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASLPQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQW
21 -> 220 TTLRLSTDVDLLVLDGKKVSSSLLRGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLENEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASLPQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQPSS

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6498-MONOMER
ECOLIWIKI:
b0964
INTERPRO:
IPR018635
PANTHER:
PTHR38108
PFAM:
PF09829
PRIDE:
P0A8X4
REFSEQ:
NP_415484
UNIPROT:
P0A8X4


Operon      
Name: yccT         
Operon arrangement:
Transcription unit        Promoter
yccT


Transcriptional Regulation      
Display Regulation             
Activated by: CsgD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1288 1027030 reverse nd [RS-EPT-CBR] [1]
  promoter yccTp5 1027797 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_1290 1027835 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1291 (cluster) 1027925 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1292 1027929 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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