Gene
Name:	yccX
Synonym(s):	ECK0959, G6502, b0968
Genome position(nucleotides):	1030064 --> 1030342 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	52.33
External database links:

ASAP:	ABE-0003276
ECHOBASE:	EB3490
OU-MICROARRAY:	b0968
PortEco:	yccX
STRING:	511145.b0968
COLOMBOS:	yccX

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	yccXp5	1029980	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.56. P-value: 9.904e-5 Read more >	[ICWHO]	[1]
promoter	yccXp7	1029994	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 5.285. P-value: 8.961e-5 Read more >	[ICWHO]	[1]
promoter	rlmIp4	1030001	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.166. P-value: 1.980e-5 Read more >	[ICWHO]	[1]
promoter	yccXp4	1030061	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.15. P-value: 5.381e-5 Read more >	[ICWHO]	[1]
promoter	TSS_1295 (cluster)	1030888	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1030887 to 1030888, where the highest frequency is at position 1030110. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]
promoter	TSS_1296	1030891	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_1297	1031154	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_1298	1031167	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_1299	1031229	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_1300	1031236	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_1301 (cluster)	1031262	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1031261 to 1031262, where the highest frequency is at position 1030485. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]
promoter	TSS_1302	1031273	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_1303	1031275	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_1304 (cluster)	1031345	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1031344 to 1031345, where the highest frequency is at position 1030567. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]

Evidence
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates