RegulonDB RegulonDB 10.7: Gene Form
   

ycgH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycgH ymgD ymgF

Gene      
Name: ycgH    Texpresso search in the literature
Synonym(s): ECK1157, G6609, b1169, b1170, b4491
Type: Pseudo Gene
Genome position(nucleotides): 1219601 --> 1222248 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.28
Note(s): Comment from EcoGene: ycgH has an in-frame stop codon at codon 507 and has a frameshift caused by a one basepair deletion in codon 859.
External database links:  
ASAP:
ABE-0285092
ASAP:
ABE-0003924
ASAP:
ABE-0003921
ECOO157CYC:
Z0402
OU-MICROARRAY:
b1170
OU-MICROARRAY:
b1169
PORTECO:
ycgH_1
PORTECO:
ycgH_2
REGULONDB:
b4491
M3D: ycgH
COLOMBOS: ycgH
PortEco: b1169


Product      
Name: putative transporter component, N-terminal fragment
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 4.444
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] Van Dyk TK., et al., 2001
External database links:  
ECOCYC:
G6609-MONOMER
ECOLIWIKI:
b1169
ECOO157CYC:
Z0402-MONOMER


Operon      
Name: ycgH         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Van Dyk TK., DeRose EJ., Gonye GE., 2001, LuxArray, a high-density, genomewide transcription analysis of Escherichia coli using bioluminescent reporter strains., J Bacteriol 183(19):5496-505


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