RegulonDB RegulonDB 10.7: Gene Form
   

ymgG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ymgG ymgD ymgI terminator TSS_1500 TSS_1500

Gene      
Name: ymgG    Texpresso search in the literature
Synonym(s): ECK1159, G6612, b1172
Genome position(nucleotides): 1222644 <-- 1222988 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.17
External database links:  
ASAP:
ABE-0003928
ECHOBASE:
EB4334
OU-MICROARRAY:
b1172
PORTECO:
ymgG
REGULONDB:
b1172
STRING:
511145.b1172
M3D: ymgG
COLOMBOS: ymgG
PortEco: b1172


Product      
Name: PF13488 family protein YmgG
Synonym(s): YmgG
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 10.807
Isoelectric point: 11.242
Motif(s):
 
Type Positions Sequence
30 -> 111 GALLGAGVGLLTGNGVNGVLKGAAVGAGVGAVTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILG
74 -> 113 GAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILGKM
25 -> 61 NRTTKGALLGAGVGLLTGNGVNGVLKGAAVGAGVGAV

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6612-MONOMER
ECOLIWIKI:
b1172
INTERPRO:
IPR022833
INTERPRO:
IPR025693
INTERPRO:
IPR039567
PFAM:
PF13488
PFAM:
PF13436
PRIDE:
Q7DFV3
PROTEINMODELPORTAL:
Q7DFV3
REFSEQ:
NP_415690
UNIPROT:
Q7DFV3


Operon      
Name: ymgGD         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Translational


Regulation by small RNA    
  Display Regulation
small RNA gcvB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1500 1223097 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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