RegulonDB RegulonDB 10.7: Gene Form
   

ymgE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycgR ycgY ymgE terminator ycgYp6 ycgYp6 ycgYp1 ycgYp1 ymgEp6 ymgEp6 ycgRp ycgRp ymgEp7 ymgEp7

Gene      
Name: ymgE    Texpresso search in the literature
Synonym(s): ECK1183, G6624, b1195, tag
Genome position(nucleotides): 1244728 --> 1244982 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.33
External database links:  
ASAP:
ABE-0004014
ECHOBASE:
EB4084
OU-MICROARRAY:
b1195
PORTECO:
ymgE
REGULONDB:
b1195
STRING:
511145.b1195
M3D: ymgE
COLOMBOS: ymgE
PortEco: b1195


Product      
Name: PF04226 family protein YmgE
Synonym(s): Tag, YmgE
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 8.775
Isoelectric point: 9.823
Motif(s):
 
Type Positions Sequence
1 -> 21 MGIIAWIIFDLIAGIIAKLIM
27 -> 47 GGFFLTCILGIVGAVVGGWLA
34 -> 83 ILGIVGAVVGGWLATMFGIGGSISGFNLHSFLVAVVGAILVLGIFRLLRR
58 -> 78 GFNLHSFLVAVVGAILVLGIF

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
ECOCYC:
G6624-MONOMER
ECOLIWIKI:
b1195
INTERPRO:
IPR007341
PANTHER:
PTHR33884
PFAM:
PF04226
PRIDE:
P76011
PROTEINMODELPORTAL:
P76011
REFSEQ:
NP_415713
UNIPROT:
P76011


Operon      
Name: ymgE         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ymgEp7 1244555 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ymgEp6 1244579 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ycgYp1 1245083 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ycgYp6 1245101 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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