RegulonDB

Gene
Name:	yciQ
Synonym(s):	ECK1262, G6636, b1268, yciP
Genome position(nucleotides):	1324746 --> 1326641 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	46.99
External database links:

ASAP:	ABE-0004256
ECHOBASE:	EB2797
OU-MICROARRAY:	b1268
PortEco:	yciQ
STRING:	511145.b1268
COLOMBOS:	yciQ

Product

Name:

DUF2207 domain-containing protein YciQ

Synonym(s):

YciP, YciQ

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

71.289

Isoelectric point:

8.097

Motif(s):

Type	Positions	Sequence
	616 -> 630	GGGAGGGAGGGGGGG
	35 -> 572	ISLFDVEATLQPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFEIYKTRFSLQFSNIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNASAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRVNEGATRNNAVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSSFYRSDTFLQWGGLAILAVILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRVIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFTAVCLTGYLTGMGYIFLPKFTQTGQQRYAHGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISANLGREWA
	84 -> 84	A
	88 -> 88	N

Classification:

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

yciVOQ

Operon arrangement:

Transcription unit	Promoter
yciVOQ	yciVp

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_1703 (cluster)	1326296	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1326296 to 1326297, where the highest frequency is at position 1324321. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_1704 (cluster)	1326918	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1326918 to 1326919, where the highest frequency is at position 1324942. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_1705	1326921	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1706	1326973	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1707	1326992	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1708	1327047	forward	nd	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)