RegulonDB RegulonDB 10.7: Gene Form
   

yciW gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rnb yciW fabI CysB anti-anti-terminator anti-terminator terminator yciWp4 yciWp4 yciWp yciWp rnbp1 rnbp1 rnbp2 rnbp2 TSS_1732 TSS_1732

Gene      
Name: yciW    Texpresso search in the literature
Synonym(s): ECK1282, G6640, b1287
Genome position(nucleotides): 1348980 <-- 1350107 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.8
External database links:  
ASAP:
ABE-0004322
ECHOBASE:
EB4010
OU-MICROARRAY:
b1287
PORTECO:
yciW
REGULONDB:
b1287
STRING:
511145.b1287
M3D: yciW
COLOMBOS: yciW
PortEco: b1287


Product      
Name: putative oxidoreductase
Synonym(s): YciW
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 42.22
Isoelectric point: 6.351
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6640-MONOMER
ECOLIWIKI:
b1287
INTERPRO:
IPR029032
PRIDE:
P76035
PROTEINMODELPORTAL:
P76035
REFSEQ:
NP_415803
SMR:
P76035
UNIPROT:
P76035


Operon      
Name: yciW         
Operon arrangement:
Transcription unit        Promoter
 


Transcriptional Regulation      
Display Regulation             
Activated by: CysB


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1732 1348735 reverse nd [RS-EPT-CBR] [1]
  promoter yciWp4 1350236 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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