RegulonDB RegulonDB 10.8: Gene Form
   

ydcO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydcO insQ sutR SutR SutR anti-terminator anti-anti-terminator anti-anti-terminator anti-terminator terminator ydcNp5 ydcNp5 sutRp sutRp

Gene      
Name: ydcO    Texpresso search in the literature
Synonym(s): ECK1427, G6744, b1433
Genome position(nucleotides): 1504905 <-- 1506080 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.98
External database links:  
ASAP:
 ABE-0004780
ECHOBASE:
 EB3521
OU-MICROARRAY:
 b1433
PortEco:
 ydcO
STRING:
 511145.b1433
COLOMBOS: ydcO


Product      
Name: putative transport protein YdcO
Synonym(s): YdcO
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 40.583
Isoelectric point: 8.595
Motif(s):
 
Type Positions Sequence
312 -> 332 MAALPVSWIQMLAGLALLSTI
362 -> 382 LVGIGSAFWGLIAGGVCYVVL
43 -> 63 ISGWMTALGLAMGVSTLTLTL
201 -> 221 YITPDFSFAHSLSVALPLFLV
247 -> 267 IVFTGLLALVFSPFGVYSVGI

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0042925 - benzoate transmembrane transporter activity
biological_process GO:0042919 - benzoate transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
[2] Pao SS., et al., 1998
External database links:  
ECOCYC:
 B1433-MONOMER
ECOLIWIKI:
 b1433
INTERPRO:
 IPR004711
PANTHER:
 PTHR30199
PFAM:
 PF03594
PRIDE:
 P76103
PROSITE:
 PS00041
REFSEQ:
 NP_415950
UNIPROT:
 P76103


Operon      
Name: ydcO         
Operon arrangement:
Transcription unit        Promoter
ydcO


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ydcNp5 1506154 forward Similarity to the consensus
Read more > 		[ICWHO] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Pao SS., Paulsen IT., Saier MH., 1998, Major facilitator superfamily., Microbiol Mol Biol Rev 62(1):1-34

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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