RegulonDB

RegulonDB RegulonDB 10.8: Gene Form

yddJ gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	yddJ
Synonym(s):	ECK1464, G6771, b1470
Type:	Pseudo Gene
Genome position(nucleotides):	1544384 <-- 1544719 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	35.71
External database links:

ASAP:	ABE-0004904
ECHOBASE:	EB3543
ECOO157CYC:	Z2242
OU-MICROARRAY:	b1470
PortEco:	yddJ
STRING:	511145.b1470
COLOMBOS:	yddJ

Product

Name:

uncharacterized protein YddJ

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

4.584

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

ECOO157CYC:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

yddLKJ

Operon arrangement:

Transcription unit	Promoter

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	narZp	1542690		reverse	Rpos has been proved to control narZYWV operon transcription under anaerobiosis by Chang L,1999 and a potential σ³⁸ promoter was identified 116 bp upstream the narU start codon. Read more >	[AIPP]	[1]
	promoter	yddJp8	1544758		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 6.76. P-value: 1.427e-6 Read more >	[ICWHO]	[1]
	promoter	yddJp9	1544763		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 8.295. P-value: 2.902e-6 Read more >	[ICWHO]	[1]
	promoter	yddJp5	1544825		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.074. P-value: 8.524e-5 Read more >	[ICWHO]	[1]
	promoter	yddJp6	1544851		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.3. P-value: 7.791e-5 Read more >	[ICWHO]	[1]
	promoter	yddJp1	1544866		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: -3.21. P-value: 6.910e-5 Read more >	[ICWHO]	[1]

Evidence
[AIPP] Automated inference of promoter position
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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