RegulonDB RegulonDB 10.8: Gene Form
   

lsrC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: lsrC    Texpresso search in the literature
Synonym(s): ECK1507, G6801, b1514, ydeY
Genome position(nucleotides): 1603019 --> 1604047 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.74
External database links:  
ASAP:
 ABE-0005059
ECHOBASE:
 EB3568
OU-MICROARRAY:
 b1514
PortEco:
 lsrC
STRING:
 511145.b1514
COLOMBOS: lsrC


Product      
Name: Autoinducer-2 ABC transporter membrane subunit LsrC
Synonym(s): LsrC, YdeY
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 36.395
Isoelectric point: 10.409
Motif(s):
 
Type Positions Sequence
70 -> 90 ITGMCAVLLGMLLNAGYSLPV
157 -> 177 LGVSAIGWLTIILVAFMAWLL
213 -> 233 LNGCMAALAGIVFASQIGFIP
284 -> 304 IPAWWNDFIAGLVLLAVLVFD
115 -> 135 IPAIVATLGTLGLYRGIMLLW

 
Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Evidence: [ICA] Inferred by computational analysis
External database links:  
DIP:
 DIP-11689N
ECOCYC:
 YDEY-MONOMER
ECOLIWIKI:
 b1514
INTERPRO:
 IPR001851
PFAM:
 PF02653
PRIDE:
 P77672
PRODB:
 PRO_000023130
REFSEQ:
 NP_416031
UNIPROT:
 P77672


Operon      
Name: lsrACDBFG-tam         
Operon arrangement:
Transcription unit        Promoter
lsrACDBFG-tam
tam


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: LsrR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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