RegulonDB RegulonDB 10.8: Gene Form
   

lsrB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

lsrB lsrD lsrF

Gene      
Name: lsrB    Texpresso search in the literature
Synonym(s): ECK1509, G6803, b1516, yneA
Genome position(nucleotides): 1605051 --> 1606073 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.66
External database links:  
ASAP:
ABE-0005063
ECHOBASE:
EB3570
OU-MICROARRAY:
b1516
PortEco:
lsrB
STRING:
511145.b1516
COLOMBOS: lsrB


Product      
Name: Autoinducer-2 ABC transporter periplasmic binding protein
Synonym(s): LsrB, YneA
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane,periplasmic space
Molecular weight: 36.685
Isoelectric point: 8.141
Motif(s):
 
Type Positions Sequence
27 -> 340 AERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLKNDKVAIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIKGVGQVEVSPNSVQGYDYEADGNGIVLLPERVIFNKENIGKYDF
1 -> 26 MTLHRFKKIALLSALGIAAISMNVQA
30 -> 285 IAFIPKLVGVGFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLKNDKVAIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKK

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.p - ABC superfamily, periplasmic binding component
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
GO:0042597 - periplasmic space
GO:0043190 - ATP-binding cassette (ABC) transporter complex
biological_process GO:0009372 - quorum sensing
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
YNEA-MONOMER
ECOLIWIKI:
b1516
INTERPRO:
IPR028082
INTERPRO:
IPR030159
INTERPRO:
IPR025997
MODBASE:
P76142
PANTHER:
PTHR46847:SF4
PFAM:
PF13407
PRIDE:
P76142
PRODB:
PRO_000023129
REFSEQ:
NP_416033
SMR:
P76142
SWISSMODEL:
P76142
UNIPROT:
P76142


Operon      
Name: lsrACDBFG-tam         
Operon arrangement:
Transcription unit        Promoter
lsrACDBFG-tam
tam


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: LsrR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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