RegulonDB RegulonDB 10.8: Gene Form
   

yneE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

uxaB yneE tam yneEp5 yneEp5 yneEp7 yneEp7

Gene      
Name: yneE    Texpresso search in the literature
Synonym(s): ECK1513, G6807, b1520
Genome position(nucleotides): 1608108 <-- 1609022 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.98
External database links:  
ASAP:
ABE-0005072
ECHOBASE:
EB3574
OU-MICROARRAY:
b1520
PortEco:
yneE
STRING:
511145.b1520
COLOMBOS: yneE


Product      
Name: PF01062 family inner membrane protein YneE
Synonym(s): YneE
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 34.809
Isoelectric point: 7.922
Motif(s):
 
Type Positions Sequence
220 -> 240 LFCIMLPFALVVDLHYMTPFI
50 -> 70 IKFTLAPFSILGVAIAIFLGF
28 -> 48 LLLNFLFSIAVIFMLPWYTHL
1 -> 280 MIVRPQQHWLRRIFVWHGSVLSKISSRLLLNFLFSIAVIFMLPWYTHLGIKFTLAPFSILGVAIAIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKTTLPDSASVREFARLQIAFAHCLRMTLRKQPQAEVLAHYLKTEDLQRVLASNSPANRILLIMGEWLAVQRRNGQLSDILFISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFISVLISYTFISLDCLAEELEDPFGTENNDLPLDAICNAIEI

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0071978 - bacterial-type flagellum-dependent swarming motility
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
G6807-MONOMER
ECOLIWIKI:
b1520
INTERPRO:
IPR021134
PFAM:
PF01062
PRIDE:
P76146
REFSEQ:
NP_416037
SMR:
P76146
UNIPROT:
P76146


Operon      
Name: yneE         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yneEp7 1609140 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yneEp5 1609182 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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